Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
All Gaps |
| All gaps of unknown nucleotides (N's), including AGP annotated gaps |
Assembly |
| Assembly |
GC Percent |
| GC Percent in 5-Base Windows |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
Tandem Dups |
| Paired identical sequences |
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NCBI RefSeq |
| RefSeq gene predictions from NCBI |
Ensembl genes |
| Ensembl genes 2020_11 |
Augustus |
| Augustus Gene Predictions |
TOGA vs. galGal6 |
| TOGA annotations using chicken/galGal6 as reference |
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RefSeq mRNAs |
| RefSeq mRNAs mapped to this assembly |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
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Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
RepeatModeler |
| RepeatModeler Repetitive Elements |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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