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Base Position
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Chromosome Band
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Gap
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GC Percent
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Assembly
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INSDC
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RefSeq Acc
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Restr Enzymes
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Short Match
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Melting Temp.
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RNASlider MFE
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1M-8M Screens (R5)
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9M Screen (R5)
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GAA Screen
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Chr4 Constructs
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Landing Pad Lines (R5)
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MiMIC Lines
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Het. Domains (R5)
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BG3 9-state (R5)
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S2 9-state (R5)
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BG3 30-state (R5)
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S2 30-state (R5)
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Kc 5-state (R5)
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hiHMM Models (R5)
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S2 Zhou 30-state (R5)
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LAD (R5)
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Hi-C Domains (Embryos) (R5)
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Topological Boundaries (R5)
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TAD Boundaries (Nuc. Cycle 14)
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HiCseg Domains (Kc167) (R5)
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MARs (Embryos)
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Polytene TADs (R5)
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GCSDI Models (R5)
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FlyBase Genes
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FlyBase Exons
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FlyBase CDS
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FlyBase Pseudogenes
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FlyBase Non-coding
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Drosophila RefSeq Transcripts
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piRNA Clusters (R5)
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Pfam in RefSeq
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UniProt
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FlyBase 6.06 Genes
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FlyBase 6.06 Proteins
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FlyBase 6.06 Exons
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FlyBase 6.06 CDS
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FlyBase 6.06 Pseudogenes
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FlyBase 6.06 Non-coding
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Phantom Peaks (R5)
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modENCODE Histones ChIP-Seq
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PePr Histone Modifications Peaks
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MUSIC Histone Modifications Peaks
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Genome Mappability
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modENCODE PolII ChIP-Seq
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MUSIC PolII ChIP-Seq Peaks
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PolII ChIP-Seq (Cell Lines)
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RNA PolII X-ChIP-Seq
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Inhibit Topoisomerases PolII ChIP-Seq
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Basal Transcription Factors ChIP-Seq
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GAF KD Differential Regions
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Basal Transcription Factors ChIP-exo
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ORGANIC Enrichment (S2 Cells)
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Architectural Proteins ChIP-Seq (Kc167)
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Architectural Proteins ChIP-Seq (S2)
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Heat Shock Proteins ChIP-Seq (S2)
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TF ChIP-nexus
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ChIP-Seq MBT Embryos
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CLAMP ChIP-Seq
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Henriques 2018 ChIP-Seq
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Zelda ChIP-Seq
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Su(H) ChIP-Seq
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Histone Variants ChIP-Seq (S2)
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R-Loop DRIP-Seq (S2)
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modENCODE Histone Modifications (R5)
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modENCODE Chromosomal Proteins (R5)
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modERN TF Peaks
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Unique ChIP-chip Probes
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Pausing Factors ChIP-chip (S2 Cells)
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wAna Alignments
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wRi Alignments
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wMel Alignments
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Wolbachia Proteins
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Detected DHS Positions (Cell Lines) (R5)
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DHS Read Density (Cell Lines) (R5)
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Detected DHS Positions (Embryos)
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DHS Read Density (Embryos)
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MACS2 DHS
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TSS (Embryonic) (R5)
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TSS (Celniker) (R5)
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Combined modENCODE CAGE TSS
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modENCODE CAGE Tag Clusters
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modENCODE CAGE Read Density
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Combined RAMPAGE TSS (R5)
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RAMPAGE TSS Read Density (R5)
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Combined RAMPAGE TSS (Replicate 2) (R5)
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RAMPAGE TSS Read Density (Replicate 2) (R5)
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Combined MachiBase TSS
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MachiBase TSS Read Density
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Combined Exo-seq TSS
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Exo-seq Read Density
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Exo-seq Tag Clusters
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MACE TSS
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Exosome RNAi CAGE
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Exosome RNAi CAGE Tag Clusters
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PEAT (S2 Cells)
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TES (Celniker) (R5)
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TFBS HOT Spots (R5)
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MACS STARR-seq Peaks
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MACS STARR-seq Enrichment
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MUSIC STARR-seq Peaks
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MUSIC STARR-seq Enrichment
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PePr STARR-seq Peaks
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hkCP dCP STARR-Seq
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Enhancers (R5)
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Silencers (R5)
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Insulators (R5)
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Origins of Replication (R5)
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SNS Origins of Replication (R5)
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EPDnew Promoters
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Schor 2017 CAGE Peaks (R5)
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REDfly Regulatory Elements
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CORE Promoters
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GRO-Seq (R5)
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Core LJ 2012 GRO-Seq (R5)
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PRO-seq (R5)
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Schaaf CA 2013 BG3 PRO-seq
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Duarte FM 2016 PRO-seq
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FStitch Nascent Transcripts
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3'NT (S2 Cells)
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CapSeq Tag Clusters
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CapSeq Read Density
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Start-Seq TSS (Larvae) (R5)
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scRNAs (S2 Cells)
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Permanganate ChIP-Seq (R5)
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Embryos FAIRE-Seq
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Schulz FAIRE-Seq
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Embryos ATAC-Seq
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3rd Instar Larvae ATAC-Seq
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Eye Discs ATAC-Seq
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MNase Accessibility (R5)
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GAF RNAi MNase
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GAF vs. LacZ RNAi MNase
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NELF RNAi MNase
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NELF RNAi vs. Mock MNase
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MBT Embryos MNase
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FlyBase Exon Junctions
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Combined modENCODE RNA-Seq (Development) (R5)
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modENCODE RNA-Seq (Development) (R5)
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modENCODE RNA-Seq (Cell Lines)
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Aggregated RNA-Seq Coverage
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Drosophila Conservation (36 Species)
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RefSeq Drosophila Chain/Net
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Drosophila Conservation (28 Species)
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Drosophila Conservation (26 Species)
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PhyloP (14 Species)
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PhastCons (14 Species)
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Conservation (14 Species)
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Drosophila Chain/Net
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(dm3) D. mel. Chain
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(dm3) D. mel. Net
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Variants in lacO Mutants (All)
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Variants in lacO Mutants (Filtered)
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UniProt Variants
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dbSNP
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dbVar
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DGRP v2 (R5)
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DGRP TE Insertions (ngs_te_mapper) (R5)
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DGRP TE Insertions (TEMP)
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FlyVar EMS Screen
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Natural TE
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Interrupted Rpts
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Microsatellite
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Simple Repeats
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WM + SDust
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RepeatMasker
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TE Density
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Combined Library
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TransposonPSI
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TANTAN
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Tallymer
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RepeatDetector
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Inverted Repeats
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Combined modENCODE RNA-Seq (Development)
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Combined Splice Junctions (Development)
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modENCODE RNA-Seq (Development)
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Combined modENCODE RNA-Seq (Tissues)
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Combined Splice Junctions (Tissues)
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modENCODE RNA-Seq (Tissues)
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Combined modENCODE RNA-Seq (Cell Lines)
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Combined Splice Junctions (Cell Lines)
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modENCODE RNA-Seq (Cell Lines)
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Combined RAMPAGE Embryos TSS
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TSRchitect RAMPAGE Embryos TSS
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TSRchitect Combined RAMPAGE TSS (Replicate 1)
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TSRchitect RAMPAGE TSS Read Density (Replicate 1)
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TSRchitect Combined RAMPAGE TSS (Replicate 2)
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TSRchitect RAMPAGE TSS Read Density (Replicate 2)
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